Homepage

Welcome to Genomic analysis by a biologist!

My site is organized into a series of topics as outlined below:

• Lessons Learned: a brief description of who I am and why I created the blog.
• NGS QC: a basic overview of quality assessment of next-generation sequencing (NGS) data.
• ChIP-Seq: an introduction to Chromatin Immunoprecipitation NGS data analysis using a published ER-α ChIP-Seq dataset as an example.
• RNA-Seq: an introduction to RNA NGS data analysis using a published dataset of prostate cancer biopsies pre- and post-treatment as an example.
• Relational Databases and SQL: an introduction to relational databases and structured query language (SQL), providing an example of how I used these tools for one of my co-authored publications.
• ~=== Python: an introduction to the user-friendly scripting language with examples of how I used this tool for two of my co-authored publications.
• Scientific Publications: a list of co-authored publications, organized chronologically within the role in which they were published.

Thanks for checking out my site, and please feel free to add comments and/or suggestions!

Sincerely,

Doug